It's disappointing to see that there isn't an option that opens you up to completing the Junkyard dispute between the Eels and Scrappers by aligning with the Free Drones after you clear out the SRO. The FD leader even says that he'll send a delegate to JUnkyard, but nothing more becomes of that. There's also no acknowledgement that the assualt has taken place by anyone in Junkyard, especially Silas who still mentions the Protectorate as a viable ally. I guess that for any body to even try something like this it would take lots of meta knowledge, but it sucks to not see anything become of attempting this coarse of action.