So, I did final mission for Free Drones, which included assault on the South Rail Outpost.
I did not enter the embassy after that. Instead, I retreated to Free Drone base, and everything is good.
But, if I go to the Junkyard by the boat, all Black Eels are hostile.
Now, while Black Eels did get help from Protectorate in the past, at this point there were no Protectorate presence at the docks. They all seem to have pulled off Junkyard.
Yet Black Eels still attacked. This seems to be bug.
Also all my SGS credits became worthless after this. With Colton gone, there are no other merchants in the whole game that would exchange SGS credits for the stygs (really?!?)
On the other hand, I find it nice touch that embassy doors, from Junkyard side, are closed and locked after this point.
.
Also, is it per design that after this mission, Protectorate forces will always be hostile to you (with exception of Core City docks)?
While I kinda understand it, it does seem forced, since none of the other anti-Protectorate missions lead to this result.